Brownian dynamics

Brownian dynamics (BD) can be used to describe the motion of molecules for example in molecular simulations or in reality. It is a simplified version of Langevin dynamics and corresponds to the limit where no average acceleration takes place. This approximation can also be described as 'overdamped' Langevin dynamics, or as Langevin dynamics without inertia.

In Langevin dynamics, the equation of motion is

${\displaystyle M{\ddot {X}}=-\nabla U(X)-\gamma {\dot {X}}+{\sqrt {2\gamma k_{B}T}}R(t)}$

where

• ${\displaystyle \gamma }$ is a friction coefficient,
• ${\displaystyle U(X)}$ is the particle interaction potential,
• ${\displaystyle \nabla }$ is the gradient operator such that ${\displaystyle -\nabla U(X)}$ is the force calculated from the particle interaction potentials
• the dot is a time derivative such that ${\displaystyle {\dot {X}}}$ is the velocity, and ${\displaystyle {\ddot {X}}}$ is the acceleration
• ${\displaystyle T}$ is the temperature
• ${\displaystyle k_{B}}$ is Boltzmann's constant
• ${\displaystyle R(t)}$ is a delta-correlated stationary Gaussian process with zero-mean, satisfying

${\displaystyle \left\langle R(t)\right\rangle =0}$

${\displaystyle \left\langle R(t)R(t')\right\rangle =\delta (t-t').}$

In Brownian dynamics, the ${\displaystyle M{\ddot {X}}(t)}$ term is neglected, and the sum of these terms is zero.

${\displaystyle 0=-\nabla U(X)-\gamma {\dot {X}}+{\sqrt {2\gamma k_{B}T}}R(t)}$

Using the Einstein relation, ${\displaystyle D=k_{B}T/\gamma }$, it is often convenient to write the equation as,

${\displaystyle {\dot {X}}(t)=-{\frac {D}{k_{B}T}}\nabla U(X)+{\sqrt {2D}}R(t).}$

See also

• Brownian motion
• Immersed boundary method

References